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A model organism is a that is extensively studied to understand particular phenomena, with the expectation that discoveries made in the organism will provide insight into the workings of other organisms.Griffiths, E. C. (2010) What is a model? Model organisms are widely used to research human when human experimentation would be unfeasible or .

(1986). 9780520055018, University of California Press. .
This strategy is made possible by the of all living organisms, and the conservation of metabolic and developmental pathways and over the course of .

Research using animal models has been central to most of the achievements of modern medicine. It has contributed most of the basic knowledge in fields such as human and , and has played significant roles in fields such as and infectious disease. The results have included the near-eradication of polio and the development of organ transplantation, and have benefited both humans and animals. From 1910 to 1927, Thomas Hunt Morgan's work with the fruit fly Drosophila melanogaster identified as the vector of inheritance for genes, and wrote that Morgan's discoveries "helped transform biology into an experimental science". Research in model organisms led to further medical advances, such as the production of the diphtheria antitoxin and the 1922 discovery of and its use in treating diabetes, which had previously meant death. Modern general anaesthetics such as were also developed through studies on model organisms, and are necessary for modern, complex surgical operations. Other 20th-century medical advances and treatments that relied on research performed in animals include techniques,Williamson C (1926) J. Urol. 16: p. 231 the heart-lung machine, , and the vaccine.

In researching human , model organisms allow for better understanding the disease process without the added risk of harming an actual human. The species of the model organism is usually chosen so that it reacts to disease or its treatment in a way that resembles human , even though care must be taken when generalizing from one organism to another. However, many drugs, treatments and cures for human diseases are developed in part with the guidance of animal models. Treatments for animal diseases have also been developed, including for , , , feline immunodeficiency virus (FIV), , Texas cattle fever, classical swine fever (hog cholera), , and other parasitic infections. Animal experimentation continues to be required for biomedical research, and is used with the aim of solving medical problems such as Alzheimer's disease, AIDS, multiple sclerosis, spinal cord injury, many headaches, and other conditions in which there is no useful model system available.

Model organisms are drawn from all three domains of life, as well as . One of the first model systems for molecular biology was the bacterium ( E. coli), a common constituent of the human digestive system. The mouse ( ) has been used extensively as a model organism and is associated with many important biological discoveries of the 20th and 21st centuries. Other examples include baker's yeast ( Saccharomyces cerevisiae), the T4 phage virus, the Drosophila melanogaster, the flowering plant Arabidopsis thaliana, and ( Cavia porcellus). Several of the bacterial viruses () that infect also have been very useful for the study of gene structure and (e.g. phages and T4). Disease models are divided into three categories: homologous animals have the same causes, symptoms and treatment options as would humans who have the same disease, isomorphic animals share the same symptoms and treatments, and predictive models are similar to a particular human disease in only a couple of aspects, but are useful in isolating and making predictions about mechanisms of a set of disease features.


History
The use of animals in research dates back to , with (384–322 BCE) and (304–258 BCE) among the first to perform experiments on living animals.Cohen BJ, Loew FM. (1984) Laboratory Animal Medicine: Historical Perspectives in Laboratory Animal Medicine Academic Press, Inc: Orlando, FL, USA; Fox JG, Cohen BJ, Loew FM (eds) Discoveries in the 18th and 19th centuries included Antoine Lavoisier's use of a in a to prove that respiration was a form of combustion, and 's demonstration of the germ theory of disease in the 1880s using in sheep.

Research using animal models has been central to most of the achievements of modern medicine.

(1988). 9780309038393, National Academies Press. .
It has contributed most of the basic knowledge in fields such as human and , and has played significant roles in fields such as and infectious disease.
(1988). 9780309038393, National Academies Press. .
Hau and Shapiro 2011:
  • (2025). 9781420084566, CRC Press. .
  • (2025). 9781420084580, CRC Press. .
    For example, the results have included the near-eradication of polio and the development of organ transplantation, and have benefited both humans and animals.
    (1991). 9780309569941, National Academies Press. .
    From 1910 to 1927, Thomas Hunt Morgan's work with the fruit fly Drosophila melanogaster identified as the vector of inheritance for genes. Drosophila became one of the first, and for some time the most widely used, model organisms,Kohler, Lords of the Fly, chapter 5 and wrote that Morgan's discoveries "helped transform biology into an experimental science".Kandel, Eric. 1999. "Genes, Chromosomes, and the Origins of Modern Biology", Columbia Magazine D. melanogaster remains one of the most widely used eukaryotic model organisms. During the same time period, studies on mouse genetics in the laboratory of William Ernest Castle in collaboration with led to generation of the DBA ("dilute, brown and non-agouti") inbred mouse strain and the systematic generation of other inbred strains. The mouse has since been used extensively as a model organism and is associated with many important biological discoveries of the 20th and 21st centuries.
    (2004). 9780080542539, Elsevier Science.

In the late 19th century, Emil von Behring isolated the toxin and demonstrated its effects in guinea pigs. He went on to develop an antitoxin against diphtheria in animals and then in humans, which resulted in the modern methods of immunization and largely ended diphtheria as a threatening disease. Bering Nobel Biography The diphtheria antitoxin is famously commemorated in the Iditarod race, which is modeled after the delivery of antitoxin in the 1925 serum run to Nome. The success of animal studies in producing the diphtheria antitoxin has also been attributed as a cause for the decline of the early 20th-century opposition to animal research in the United States. Walter B. Cannon Papers, American Philosophical Society

Subsequent research in model organisms led to further medical advances, such as Frederick Banting's research in dogs, which determined that the isolates of pancreatic secretion could be used to treat dogs with diabetes. This led to the 1922 discovery of (with John Macleod) Discovery of Insulin and its use in treating diabetes, which had previously meant death. Thompson bio ref 's research in guinea pigs discovered the anticonvulsant properties of lithium salts,[7] John Cade and Lithium which revolutionized the treatment of , replacing the previous treatments of lobotomy or electroconvulsive therapy. Modern general anaesthetics, such as and related compounds, were also developed through studies on model organisms, and are necessary for modern, complex surgical operations.Raventos J (1956) Br J Pharmacol 11, 394Whalen FX, Bacon DR & Smith HM (2005) Best Pract Res Clin Anaesthesiol 19, 323

In the 1940s, used rhesus monkey studies to isolate the most virulent forms of the virus, Virus-typing of polio by Salk which led to his creation of a . The vaccine, which was made publicly available in 1955, reduced the incidence of polio 15-fold in the United States over the following five years. Salk polio virus improved the vaccine by passing the polio virus through animal hosts, including monkeys; the Sabin vaccine was produced for mass consumption in 1963, and had virtually eradicated polio in the United States by 1965.[8] History of polio vaccine It has been estimated that developing and producing the vaccines required the use of 100,000 rhesus monkeys, with 65 doses of vaccine produced from each monkey. Sabin wrote in 1992, "Without the use of animals and human beings, it would have been impossible to acquire the important knowledge needed to prevent much suffering and premature death not only among humans, but also among animals." "the work on [polio] prevention was long delayed by... misleading experimental models of the disease in monkeys" | ari.info

Other 20th-century medical advances and treatments that relied on research performed in animals include techniques,Carrel A (1912) Surg. Gynec. Obst. 14: p. 246Williamson C (1926) J. Urol. 16: p. 231Woodruff H & Burg R (1986) in Discoveries in Pharmacology vol 3, ed Parnham & Bruinvels, Elsevier, AmsterdamMoore F (1964) Give and Take: the Development of Tissue Transplantation. Saunders, New York the heart-lung machine,Gibbon JH (1937) Arch. Surg. 34, 1105 ,[10] Hinshaw obituary[11] StreptomycinFleming A (1929) Br J Exp Path 10, 226 and the vaccine.Medical Research Council (1956) Br. Med. J. 2: p. 454 Treatments for animal diseases have also been developed, including for , A reference handbook of the medical sciences. William Wood and Co., 1904, Edited by Albert H. Buck. , , feline immunodeficiency virus (FIV), , Texas cattle fever, classical swine fever (hog cholera), , and other parasitic infections. Animal experimentation continues to be required for biomedical research,Sources:


Selection
Models are those organisms with a wealth of biological data that make them attractive to study as examples for other and/or natural phenomena that are more difficult to study directly. Continual research on these organisms focuses on a wide variety of experimental techniques and goals from many different levels of biology—from , and , down to the tiny functional scale of individual tissues, and . Inquiries about the DNA of organisms are classed as models (with short generation times, such as the fruitfly and nematode worm), models, and parsimony models, investigating pivotal position in the evolutionary tree. What are model organisms? Historically, model organisms include a handful of species with extensive genomic research data, such as the NIH model organisms. NIH model organisms

Often, model organisms are chosen on the basis that they are amenable to experimental manipulation. This usually will include characteristics such as short life-cycle, techniques for genetic manipulation ( strains, lines, and methods of transformation) and non-specialist living requirements. Sometimes, the genome arrangement facilitates the sequencing of the model organism's genome, for example, by being very compact or having a low proportion of (e.g. yeast, arabidopsis, or pufferfish).

When researchers look for an organism to use in their studies, they look for several traits. Among these are size, , accessibility, manipulation, genetics, conservation of mechanisms, and potential economic benefit. As comparative molecular biology has become more common, some researchers have sought model organisms from a wider assortment of lineages on the tree of life.


Phylogeny and genetic relatedness
The primary reason for the use of model organisms in research is the evolutionary principle that all organisms share some degree of relatedness and genetic similarity due to . The study of taxonomic human relatives, then, can provide a great deal of information about mechanism and disease within the human body that can be useful in medicine.

Various phylogenetic trees for vertebrates have been constructed using comparative , genetics, genomics as well as the geochemical and fossil record. These estimations tell us that humans and chimpanzees last shared a common ancestor about 6 million years ago (mya). As our closest relatives, chimpanzees have a lot of potential to tell us about mechanisms of disease (and what genes may be responsible for human intelligence). However, chimpanzees are rarely used in research and are protected from highly invasive procedures. Rodents are the most common animal models. Phylogenetic trees estimate that humans and rodents last shared a common ancestor ~80-100mya. Despite this distant split, humans and rodents have far more similarities than they do differences. This is due to the relative stability of large portions of the genome, making the use of vertebrate animals particularly productive.

Genomic data is used to make close comparisons between species and determine relatedness. Humans share about 99% of their genome with chimpanzees (98.7% with bonobos) and over 90% with the mouse. With so much of the genome conserved across species, it is relatively impressive that the differences between humans and mice can be accounted for in approximately six thousand genes (of ~30,000 total). Scientists have been able to take advantage of these similarities in generating experimental and predictive models of human disease.


Use
There are many model organisms. One of the first model systems for molecular biology was the bacterium , a common constituent of the human digestive system. Several of the bacterial viruses () that infect also have been very useful for the study of gene structure and (e.g. phages and T4). However, it is debated whether bacteriophages should be classified as organisms, because they lack metabolism and depend on functions of the host cells for propagation.

In , several yeasts, particularly Saccharomyces cerevisiae ("baker's" or "budding" yeast), have been widely used in and , largely because they are quick and easy to grow. The in a simple is very similar to the cell cycle in and is regulated by homologous proteins. The fruit fly Drosophila melanogaster is studied, again, because it is easy to grow for an animal, has various visible congenital traits and has a (giant) chromosome in its salivary glands that can be examined under a light microscope. The Caenorhabditis elegans is studied because it has very defined development patterns involving fixed numbers of cells, and it can be rapidly assayed for abnormalities.


Disease models
Animal models serving in research may have an existing, inbred or induced or injury that is similar to a human condition. These test conditions are often termed as animal models of disease. The use of animal models allows researchers to investigate disease states in ways which would be inaccessible in a human patient, performing procedures on the non-human animal that imply a level of harm that would not be considered ethical to inflict on a human.

The best models of disease are similar in (mechanism of cause) and phenotype (signs and symptoms) to the human equivalent. However complex human diseases can often be better understood in a simplified system in which individual parts of the disease process are isolated and examined. For instance, behavioral analogues of anxiety or in laboratory animals can be used to screen and test new for the treatment of these conditions in humans. A 2000 study found that animal models concorded (coincided on true positives and false negatives) with human toxicity in 71% of cases, with 63% for nonrodents alone and 43% for rodents alone.

In 1987, Davidson et al. suggested that selection of an animal model for research be based on nine considerations. These include

Animal models can be classified as homologous, isomorphic or predictive. Animal models can also be more broadly classified into four categories: 1) experimental, 2) spontaneous, 3) negative, 4) orphan.

Experimental models are most common. These refer to models of disease that resemble human conditions in phenotype or response to treatment but are induced artificially in the laboratory. Some examples include:

  • The use of (pentylenetetrazol) as an animal model of
  • Induction of mechanical brain injury as an animal model of post-traumatic epilepsy
    (2025). 9781493938148
  • Injection of the 6-hydroxydopamine to dopaminergic parts of the basal ganglia as an animal model of Parkinson's disease.
  • with an auto- to induce an to model autoimmune diseases such as Experimental autoimmune encephalomyelitis
  • Occlusion of the middle cerebral artery as an animal model of ischemic stroke
    (2025). 9783709173992
  • Injection of blood in the of as a model for hemorrhagic stroke
  • and induction by impairing the integrity of barrier tissues, administering live or
  • Infecting animals with to reproduce human infectious diseases
  • Injecting animals with or antagonists of various to reproduce human
  • Using ionizing radiation to cause
  • Using gene transfer to cause
  • Implanting animals with to test and develop treatments using ionizing radiation
  • Genetically selected (such as in also known as )
  • Various animal models for of drugs for the treatment of
  • The use of the ovariectomized rat in research
  • Use of Plasmodium yoelii as a model of human malaria

Spontaneous models refer to diseases that are analogous to human conditions that occur naturally in the animal being studied. These models are rare, but informative. Negative models essentially refer to control animals, which are useful for validating an experimental result. Orphan models refer to diseases for which there is no human analog and occur exclusively in the species studied.

The increase in knowledge of the of non-human and other that are genetically close to humans is allowing the production of genetically engineered animal tissues, organs and even animal species which express human diseases, providing a more robust model of human diseases in an animal model.

Animal models observed in the sciences of and are often termed animal models of behavior. It is difficult to build an animal model that perfectly reproduces the of depression in patients. Depression, as other , consists of that can be reproduced independently and evaluated in animals. An ideal animal model offers an opportunity to understand , and factors that may lead to depression. By using animal models, the underlying molecular alterations and the causal relationship between or environmental alterations and depression can be examined, which would afford a better insight into of depression. In addition, animal models of depression are indispensable for identifying novel for depression.

(2025). 9783642197024


Important model organisms
Model organisms are drawn from all three domains of life, as well as . The most widely studied model organism is ( E. coli), which has been intensively investigated for over 60 years. It is a common, gram-negative gut bacterium which can be grown and cultured easily and inexpensively in a laboratory setting. It is the most widely used organism in molecular genetics, and is an important species in the fields of and , where it has served as the for the majority of work with .

Simple model include baker's yeast ( Saccharomyces cerevisiae) and fission yeast ( Schizosaccharomyces pombe), both of which share many characters with higher cells, including those of humans. For instance, many genes that are critical for the development of have been discovered in yeast. Chlamydomonas reinhardtii, a unicellular with well-studied genetics, is used to study and . C. reinhardtii has many known and mapped mutants and expressed sequence tags, and there are advanced methods for genetic transformation and selection of genes. Dictyostelium discoideum is used in molecular biology and , and is studied as an example of cell communication, differentiation, and programmed cell death.

Among invertebrates, the Drosophila melanogaster is famous as the subject of genetics experiments by Thomas Hunt Morgan and others. They are easily raised in the lab, with rapid generations, high , few , and easily induced observable mutations. The Caenorhabditis elegans is used for understanding the genetic control of development and physiology. It was first proposed as a model for neuronal development by in 1963, and has been extensively used in many different contexts since then.

(1997). 9780879695323, Cold Spring Harbor Laboratory Press. .
C. elegans was the first multicellular organism whose genome was completely sequenced, and as of 2012, the only organism to have its (neuronal "wiring diagram") completed.

Arabidopsis thaliana is currently the most popular model plant. Its small stature and short generation time facilitates rapid genetic studies, About Arabidopsis on The Arabidopsis Information Resource page (TAIR) and many phenotypic and biochemical mutants have been mapped. A. thaliana was the first plant to have its .

Among , ( Cavia porcellus) were used by and other early bacteriologists as a host for bacterial infections, becoming a byword for "laboratory animal", but are less commonly used today. The classic model vertebrate is currently the mouse ( ). Many inbred strains exist, as well as lines selected for particular traits, often of medical interest, e.g. body size, obesity, muscularity, and voluntary behavior. The rat ( Rattus norvegicus) is particularly useful as a toxicology model, and as a neurological model and source of primary cell cultures, owing to the larger size of organs and suborganellar structures relative to the mouse, while eggs and embryos from Xenopus tropicalis and (African clawed frog) are used in developmental biology, cell biology, toxicology, and neuroscience. Likewise, the ( Danio rerio) has a nearly transparent body during early development, which provides unique visual access to the animal's internal anatomy during this time period. Zebrafish are used to study development, toxicology and toxicopathology, specific gene function and roles of signaling pathways.

Other important model organisms and some of their uses include: T4 phage (viral infection), Tetrahymena thermophila (intracellular processes), (), hydras (regeneration and ), (neurophysiology), (development), (respiratory and cardiovascular systems), Nothobranchius furzeri (aging), non-human primates such as the and chimpanzee (, , Parkinson's disease, , and ), and (SARS-CoV-2)


Selected model organisms
The organisms below have become model organisms because they facilitate the study of certain characters or because of their genetic accessibility. For example, was one of the first organisms for which genetic techniques such as transformation or genetic manipulation has been developed.

The of all model species have been sequenced, including their / genomes. Model organism databases exist to provide researchers with a portal from which to download sequences (DNA, RNA, or protein) or to access functional information on specific genes, for example the sub-cellular localization of the gene product or its physiological role.

Phi X 174ΦX174evolution
E. colibacterial genetics, metabolism
Pseudomonas fluorescensP. fluorescensevolution, adaptive radiation
Dictyostelium discoideum immunology, host–pathogen interactions
Saccharomyces cerevisiaeBrewer's yeast
Baker's yeast
cell division, organelles, etc.
Schizosaccharomyces pombeFission yeast Fission Yeast GO slim terms >PomBase
Chlamydomonas reinhardtii hydrogen production
Tetrahymena thermophila, T. pyriformis education,
(2025). 9780123859679
biomedical research
(2025). 9781624170737, Nova Science Publishers.
Emiliania huxleyi surface sea temperature
Arabidopsis thalianaThale cresspopulation genetics
Physcomitrella patensSpreading earthmossmolecular farming
Populus trichocarpaBalsam poplardrought tolerance, lignin biosynthesis, wood formation, plant biology, morphology, genetics, and ecology
Caenorhabditis elegansNematode, Roundwormdifferentiation, development
Drosophila melanogasterFruit flydevelopmental biology, human brain degenerative disease
Callosobruchus maculatusCowpea Weevildevelopmental biology
Zebrafishembryonic development
Mummichogeffect of hormones on behavior
Nothobranchius furzeriTurquoise killifishaging, disease, evolution
Oryzias latipesJapanese rice fishfish biology, sex determination
(2025). 9780128096338
Anolis carolinensisCarolina anolereptile biology, evolution
House mousedisease model for humans
/ G. g. domesticusRed junglefowl / chickenembryological development and organogenesis
Taeniopygia guttataAustralian zebra finchvocal learning, neurobiology

Xenopus tropicalis
African clawed frog
Western clawed frog
embryonic development


Limitations
Many animal models serving as test subjects in biomedical research, such as rats and mice, may be selectively sedentary, and glucose intolerant. This may confound their use to model human metabolic processes and diseases as these can be affected by dietary energy intake and . Similarly, there are differences between the immune systems of model organisms and humans that lead to significantly altered responses to stimuli, although the underlying principles of genome function may be the same. The impoverished environments inside standard laboratory cages deny research animals of the mental and physical challenges are necessary for healthy emotional development. Without day-to-day variety, risks and rewards, and complex environments, some have argued that animal models are irrelevant models of human experience.

Mice differ from humans in several immune properties: mice are more resistant to some than humans; have a lower total fraction in the , a lower capacity, lower activity of the complement system, and a different set of involved in the inflammatory process; and lack genes for important components of the immune system, such as IL-8, IL-37, TLR10, ICAM-3, etc. Laboratory mice reared in specific-pathogen-free (SPF) conditions usually have a rather immature immune system with a deficit of memory T cells. These mice may have limited diversity of the , which directly affects the immune system and the development of pathological conditions. Moreover, persistent virus infections (for example, ) are activated in humans, but not in SPF mice, with complications and may change the resistance to bacterial . "Dirty" mice are possibly better suitable for mimicking human pathologies. In addition, inbred mouse strains are used in the overwhelming majority of studies, while the is heterogeneous, pointing to the importance of studies in interstrain hybrid, , and nonlinear mice.


Unintended bias
Some studies suggests that inadequate published data in animal testing may result in irreproducible research, with missing details about how experiments are done omitted from published papers or differences in testing that may introduce bias. Examples of hidden bias include a 2014 study from McGill University in which suggests that mice handled by men rather than women showed higher stress levels. Another study in 2016 suggested that gut in mice may have an impact upon scientific research.


Alternatives
Ethical concerns, as well as the cost, maintenance and relative inefficiency of animal research has encouraged development of alternative methods for the study of disease. Cell culture, or in vitro studies, provide an alternative that preserves the physiology of the living cell, but does not require the sacrifice of an animal for mechanistic studies. Human, inducible stem cells can also elucidate new mechanisms for understanding cancer and cell regeneration. Imaging studies (such as MRI or PET scans) enable non-invasive study of human subjects. Recent advances in genetics and genomics can identify disease-associated genes, which can be targeted for therapies.

Many biomedical researchers argue that there is no substitute for a living organism when studying complex interactions in disease pathology or treatments.


Ethics
Debate about the ethical use of animals in research dates at least as far back as 1822 when the British Parliament under pressure from British and Indian intellectuals enacted the first law for animal protection preventing cruelty to cattle. British animal protection legislation. This was followed by the Cruelty to Animals Act 1835 and the Cruelty to Animals Act 1849, which criminalized ill-treating, over-driving, and torturing animals. In 1876, under pressure from the National Anti-Vivisection Society, the Cruelty to Animals Act 1849 was amended to include regulations governing the use of animals in research. This new act stipulated that 1) experiments must be proven absolutely necessary for instruction, or to save or prolong human life; 2) animals must be properly anesthetized; and 3) animals must be killed as soon as the experiment is over. Today, these three principles are central to the laws and guidelines governing the use of animals and research. In the U.S., the Animal Welfare Act of 1970 (see also Laboratory Animal Welfare Act) set standards for animal use and care in research. This law is enforced by APHIS's Animal Care program. AWA policies.

In academic settings in which NIH funding is used for animal research, institutions are governed by the NIH Office of Laboratory Animal Welfare (OLAW). At each site, OLAW guidelines and standards are upheld by a local review board called the Institutional Animal Care and Use Committee (IACUC). All laboratory experiments involving living animals are reviewed and approved by this committee. In addition to proving the potential for benefit to human health, minimization of pain and distress, and timely and humane euthanasia, experimenters must justify their protocols based on the principles of Replacement, Reduction and Refinement. NIH need-to-know

"Replacement" refers to efforts to engage alternatives to animal use. This includes the use of computer models, non-living tissues and cells, and replacement of "higher-order" animals (primates and mammals) with "lower" order animals (e.g. cold-blooded animals, invertebrates) wherever possible. list of common model organisms approved for use by the NIH)

"Reduction" refers to efforts to minimize number of animals used during the course of an experiment, as well as prevention of unnecessary replication of previous experiments. To satisfy this requirement, mathematical calculations of statistical power are employed to determine the minimum number of animals that can be used to get a statistically significant experimental result.

"Refinement" refers to efforts to make experimental design as painless and efficient as possible in order to minimize the suffering of each animal subject.


See also
  • Animals in space
  • Animal testing on invertebrates
  • Animal testing on rodents
  • (numerical), e.g., Mycoplasma genitalium.
  • genome database of model organisms
  • Generic Model Organism Database
  • History of animal testing
  • History of model organisms
  • History of research on Arabidopsis thaliana
  • History of research on Caenorhabditis elegans
  • Mouse models of breast cancer metastasis
  • Mouse model of colorectal and intestinal cancer
  • - the Reference Sequence database


Further reading

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